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Which event can introduce a protein domain into a pre-existing protein? ​


A) gene alignment
B) intron shuffling
C) exon shuffling
D) peptide shuffling
E) exon splicing

F) A) and E)
G) A) and D)

Correct Answer

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To experimentally determine the function of an annotated gene, a researcher may _____. ​


A) look for similar gene sequences of known function
B) examine the putative protein structure
C) perform a gene knockout
D) find a pseudogene for the gene
E) determine the amino acid sequence

F) B) and C)
G) A) and E)

Correct Answer

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A researcher obtains the results of his RNA-seq analysis. Several transcripts are listed as being derived from the same gene. How is this possible? ​


A) Alternative splicing allows for different transcripts to be created by the same gene sequence.
B) The researcher's sample was contaminated.
C) Exon shuffling allows for different transcripts to be created by the same gene sequence.
D) Intron shuffling allows for different transcripts to be created by the same gene sequence.
E) It is not possible; there was an error in the alignment process.

F) A) and B)
G) A) and D)

Correct Answer

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In the microarray shown in the textbook, the cDNAs were labeled with red and green fluorescent tags. Why do some spots on the microarray emit yellow light?


A) Red and green are two of the primary colors, and if both cDNAs hybridize to the spot, the combination of the two will produce yellow light.
B) The yellow light comes from the laser, and a yellow spot indicates that neither cDNA hybridized to that spot on the microarray.
C) The over expression of one cDNA relative to the other will skew the color pattern of the spot on the microarray, resulting in the yellow color.
D) The color choice was an arbitrary decision by the artist and doesn't reflect how the process actually works.
E) Yellow spots are those that contain no DNA probes on the chip.

F) A) and E)
G) B) and D)

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A gene encoding a subunit of hemoglobin in humans is found to be homologous to a gene in chimpanzees. The homologous gene in chimpanzees likely _____. ​


A) is a pseudogene
B) encodes the same hemoglobin subunit
C) is inactive because it is in a different species
D) is a regulatory sequence
E) encodes a respiratory enzyme

F) A) and B)
G) C) and D)

Correct Answer

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For each of the following research techniques, choose the most appropriate macromolecule being studied or manipulated from the list below. Some choices may be used more than once.

Premises
Shotgun library
Responses
DNA
mRNA/cDNA
protein

Correct Answer

DNA
mRNA/cDNA
protein

Proteomics _____. ​


A) refers to the analysis of the entire protein content of a cell ​
B) refers to the analysis of all the DNA of a species
C) looks only at plasmids
D) studies mRNA levels
E) uses DNA chips

F) C) and D)
G) A) and E)

Correct Answer

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Which domain(s) have densely packed genomes with little noncoding space? ​


A) Archaea only
B) Bacteria only
C) Eukarya only
D) Archaea and Eukarya
E) Bacteria and Archaea

F) B) and E)
G) A) and D)

Correct Answer

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Which pre-mRNA processing mechanism allows different proteins to be produced from the same DNA sequence? ​


A) transposition
B) alternative splicing
C) intron shuffling
D) intron splicing
E) open reading frame shuffling

F) D) and E)
G) All of the above

Correct Answer

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Match each of the following terms with its correct definition.

Premises
bioinformatics
Responses
The study of all transcripts produced from an organism's genome
The study of similarities and differences between genome sequences of different species
Using computer programs to extract biological information from sequence data
The study of whole genomes
The proteins that can be expressed by an organism's genome
All transcripts produced by a cell
The study of proteins produced from an organism's genome

Correct Answer

The study of all transcripts produced from an organism's genome
The study of similarities and differences between genome sequences of different species
Using computer programs to extract biological information from sequence data
The study of whole genomes
The proteins that can be expressed by an organism's genome
All transcripts produced by a cell
The study of proteins produced from an organism's genome

In whole-genome shotgun sequencing, ____.


A) DNA is broken into many random, overlapping fragments that are sequenced and then assembled using computer algorithms
B) whole chromosomes are sequencedintact from the 3'end to the 5' end
C) whole chromosomes are sequenced intactfrom the 5'end to the 3' end
D) DNA is broken into a few, non-overlapping fragments that can be read directly by computer algorithms
E) DNA is broken into individual nucleotides that are sequenced and then assembled using computer algorithms

F) D) and E)
G) C) and D)

Correct Answer

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When the human genome was sequenced, we learned that there are fewer than expected protein coding genes (approximately 20,000) . Yet, the total number of proteins produced in humans approaches 100,000. What accounts for this discrepancy in numbers?


A) We have not yet identified all of the open reading frames in the human genome.
B) We have not yet fully sequenced the human genome.
C) mRNA processing mechanisms allowmultiple proteins to be produced from a single DNA sequence.
D) Some noncoding DNA sequences encode proteins.
E) There has been a gross over-estimation of the number of proteins produced in humans.

F) B) and C)
G) A) and D)

Correct Answer

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For each of the following research techniques, choose the most appropriate macromolecule being studied or manipulated from the list below. Some choices may be used more than once.

Premises
Proteomics
Responses
DNA
protein
mRNA/cDNA

Correct Answer

DNA
protein
mRNA/cDNA

What is a difference between human male and female genomes? ​


A) Males have 46 chromosomes; females have 45.
B) Males have 22 pairs of autosomal chromosomes; females have 21 pairs of autosomal chromosomes.
C) Males have 23 pairs of chromosomes plus 1 Y chromosome; females have 23 pairs of chromosomes.
D) Males have 24 different chromosomes; females have 23 different chromosomes
E) Males have an X chromosome; females do not.

F) B) and E)
G) A) and B)

Correct Answer

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Which ethical dilemma may arise from the application of pharmagogenomics? ​


A) The use of embryonic stem cells for gene therapy. ​
B) The discovery of a gene that predicts an unfavorable drug response in an individual, for whom there are no alternative treatments available.
C) The use of vaccination to prevent diseases.
D) The use of blood transfusions to treat diseases.
E) The introduction of foreign genes to restore loss of vital gene function in a patient with an infectious disease.

F) B) and E)
G) A) and D)

Correct Answer

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How can microarrays help us understand cellular functions?


A) Microarrays let us study different cellular structures under different conditions.
B) Microarrays let us directly measure protein expression in individual cells.
C) Microarrayslet us identify which portions of a genome were being expressed in a cell at a particular time.
D) Microarrays let us identify which DNA sequences are present in a particular cell type under certain conditions.
E) Microarrays let us identify which portions of a genome serve as regulatory sequences.

F) C) and D)
G) B) and C)

Correct Answer

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The percentage of the human genome that is protein-coding is less than _____. ​


A) 2%
B) 20%
C) 30%
D) 50%
E) 85%

F) All of the above
G) B) and C)

Correct Answer

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A researcher obtains a sequence of a gene of interest including the ORF, 5 ¢ untranslated region, and 3 ¢ untranslated region. Which portion of the gene sequence encodes the protein? ​


A) the 5 ¢ untranslated region and the ORF only ​
B) the ORF only
C) the ORF and 3 ¢ untranslated region only
D) the 5 ¢ and 3 ¢ untranslated regions only
E) the ORF, 5 ¢ untranslated region, and 3 ¢ untranslated region

F) A) and D)
G) C) and D)

Correct Answer

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An application of pharmacogenomics is the study of ____ for determining the appropriate dosages of certain drugs in specific patients. ​


A) drug metabolism genes ​
B) body size
C) blood volume
D) trial and error methods
E) drug interactions

F) B) and D)
G) C) and D)

Correct Answer

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What is an open reading frame (ORF) ? ​


A) a protein coding sequence plus associated regulatory sequences
B) the sequence between and including a start codon and an stop codon
C) the sequence between and including a start codon and an stop codon, minus the introns
D) the sequence between and including a start codon and an stop codon, minus the exons
E) the sequence between a start codon and stop codon in prokaryotes only

F) A) and B)
G) B) and E)

Correct Answer

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